Is there an Inyan in Chabad to wear a hat and jacket? where is the source?

Yes, there is a Halachik Inyan, practiced by Charedi Jews at large and not unique to Chabad. See references below.

Please listen here for a quick explanation on the matter.

See also here.

Sources:

ראה שו״ע או״ח צא, ו. משנ״ב צא, יב. שו״ע אדה״ז קפג, ו. שו״ת תשוה״נ ד, כו. ס׳ נקיות וכבוד בתפלה.